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Species belonging to selected taxon:

Pinus taeda



ABOUT THIS RECORD

ID: MNEST002042
species: Pinus taeda
miRNA family: MIR1313
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCCACTGAAATTATTGTTGG

miRNA*
AACAATAATTTCAGTGGTAGA

mismatches: 2
bulges: 0

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pre-miRNA
TCCCCATGAGTCTTCCAGATCGATGGAAGTCTTCCACTGAAATTATTGTTGGATAAATACACCCATGCAACTTGGTTATTGCCCAGTAGATCCCCCACCA
TGCCATGTGTTGCAACCCTGCAACTAGGTTAGACTGGGGATACACTGTAGGATACCATACCACGGCAGTATACATCCATGAATTGCAGGTGTTATTTCGA
ACAATAATTTCAGTGGTAGA
ATACCATCCGGAAGAGGAGCAACCAAAA


dot-bracket secondary structure
..........((((((.....(((((...(((.(((((((((((((((((.((.....(((((..(((((..(((.(((((((((((..((((((.....
.(((....((((((....))))))..)))......))))))..))))..((........))..))))))).....)))....))))))))))....)).)
)))))))))))))))).)))
...))))).))))))((.....))....



SIMILARITIES
miRBase pta-MIR1313: 1e-116

PMRD pta-miR1313: 1e-116

microPC miR1313: 3e-65
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: pta-MIR1313 from miRBase (MNEST039448)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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